This report provides an overview of the expression of PTEN in various cancer types, using data from the TCGA and GTEx datasets. It includes figures for TPM and log2(TPM+1).
The TCGA dataset contains three source types (though not for all cancers): Primary Tumor, Metastasis, and Tumor-adjacent Normal Tissue. The GTEx dataset represents healthy normal tissue.
Detailed results are available in the "Normal vs Tumor, Met" report.
An important note: in these plots, every sample is represented. The "Normal vs Tumor, Met" report (available on the main site) offers separate plots—one for when all samples are included and another that shows only paired samples (i.e., tumor and normal tissues from the same patients).
knitr::opts_chunk$set(echo=FALSE)TMP
Pan-cancer
TCGA and GTEx, TPM
TCGA and GTEx, log2(TPM+1)
TCGA, Breast cancer subtypes
TCGA-Breast cc., TPM
TCGA -Breast cc, log2(TPM+1)
